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A wrapper for all of the data readr_functions

Source: R/additionalData_readRs.R
readr_BeeBDC.Rd

Read in a variety of data files that are specific to certain smaller data providers. There is an internal readr function for each dataset and each one of these functions is called by readr_BeeBDC. While these functions are internal, they are displayed in the documentation of readr_BeeBDC for clarity.

Usage

readr_BeeBDC(
  dataset = NULL,
  path = NULL,
  inFile = NULL,
  outFile = NULL,
  dataLicense = NULL,
  sheet = NULL
)

readr_EPEL(path = NULL, inFile = NULL, outFile = NULL, dataLicense = NULL)

readr_ASP(path = NULL, inFile = NULL, outFile = NULL, dataLicense = NULL)

readr_BMin(path = NULL, inFile = NULL, outFile = NULL, dataLicense = NULL)

readr_BMont(path = NULL, inFile = NULL, outFile = NULL, dataLicense = NULL)

readr_Ecd(path = NULL, inFile = NULL, outFile = NULL, dataLicense = NULL)

readr_Gai(path = NULL, inFile = NULL, outFile = NULL, dataLicense = NULL)

readr_CAES(
  path = NULL,
  inFile = NULL,
  outFile = NULL,
  dataLicense = NULL,
  sheet = "Sheet1"
)

readr_KP(path = NULL, inFile = NULL, outFile = NULL, dataLicense = NULL)

readr_EcoS(path = NULL, inFile = NULL, outFile = NULL, dataLicense = NULL)

readr_GeoL(path = NULL, inFile = NULL, outFile = NULL, dataLicense = NULL)

readr_EaCO(path = NULL, inFile = NULL, outFile = NULL, dataLicense = NULL)

readr_MABC(
  path = NULL,
  inFile = NULL,
  outFile = NULL,
  dataLicense = NULL,
  sheet = "Hoja1"
)

readr_Col(
  path = NULL,
  inFile = NULL,
  outFile = NULL,
  dataLicense = NULL,
  sheet = sheet
)

readr_FSCA(path = NULL, inFile = NULL, outFile = NULL, dataLicense = NULL)

readr_SMC(path = NULL, inFile = NULL, outFile = NULL, dataLicense = NULL)

readr_Bal(
  path = NULL,
  inFile = NULL,
  outFile = NULL,
  dataLicense = NULL,
  sheet = "animal_data"
)

readr_Lic(path = NULL, inFile = NULL, outFile = NULL, dataLicense = NULL)

readr_Arm(
  path = NULL,
  inFile = NULL,
  outFile = NULL,
  dataLicense = NULL,
  sheet = "Sheet1"
)

readr_Dor(path = NULL, inFile = NULL, outFile = NULL, dataLicense = NULL)

readr_MEPB(
  path = NULL,
  inFile = NULL,
  outFile = NULL,
  dataLicense = NULL,
  sheet = NULL
)

readr_BBD(path = NULL, inFile = NULL, outFile = NULL, dataLicense = NULL)

readr_MPUJ(
  path = NULL,
  inFile = NULL,
  outFile = NULL,
  dataLicense = NULL,
  sheet = sheet
)

readr_STRI(path = NULL, inFile = NULL, outFile = NULL, dataLicense = NULL)

readr_PALA(path = NULL, inFile = NULL, outFile = NULL, dataLicense = NULL)

readr_JoLa(
  path = NULL,
  inFile = NULL,
  outFile = NULL,
  dataLicense = NULL,
  sheet = c("pre-1950", "post-1950")
)

readr_VicWam(
  path = NULL,
  inFile = NULL,
  outFile = NULL,
  dataLicense = NULL,
  sheet = "Combined"
)

Arguments

dataset

Character. The name of the dataset to be read in. For example readr_CAES can be called using "readr_CAES" or "CAES". This is not caps sensitive.

path

A character path. The path to the directory containing the data.

inFile

Character or character path. The name of the file itself (can also be the remainder of a path including the file name).

outFile

Character or character path. The name of the Darwin Core format file to be saved.

dataLicense

Character. The license to accompany each record in the Darwin Core 'license' column.

sheet

A character String. For those datasets read from an .xlsx format, provide the sheet name. NOTE: This will be ignored for .csv readr_ functions and required for .xlsx readr_ functions.

Value

A data frame that is in Darwin Core format.

Details

This function wraps several internal readr functions. Users may call readr_BeeBDC and select the dataset name to import a certain dataset. These datasets include:

Excel (.xlsx) formatted datasets: CAES, MABC, Col, Bal, MEPB, MUPJ, Arm, JoLa, and VicWam.

CSV (.csv) formatted datasets: EPEL, ASP, BMin, BMont, Ecd, Gai, KP, EcoS, GeoL, EaCo, FSCA, SMC, Lic, Dor, BBD, STRI, and PALA

See Dorey et al. 2023 BeeBDC... for further details.

Functions

  • readr_EPEL(): Reads specific data files into Darwin Core format

  • readr_ASP(): Reads specific data files into Darwin Core format

  • readr_BMin(): Reads specific data files into Darwin Core format

  • readr_BMont(): Reads specific data files into Darwin Core format

  • readr_Ecd(): Reads specific data files into Darwin Core format

  • readr_Gai(): Reads specific data files into Darwin Core format

  • readr_CAES(): Reads specific data files into Darwin Core format

  • readr_KP(): Reads specific data files into Darwin Core format

  • readr_EcoS(): Reads specific data files into Darwin Core format

  • readr_GeoL(): Reads specific data files into Darwin Core format

  • readr_EaCO(): Reads specific data files into Darwin Core format

  • readr_MABC(): Reads specific data files into Darwin Core format

  • readr_Col(): Reads specific data files into Darwin Core format

  • readr_FSCA(): Reads specific data files into Darwin Core format

  • readr_SMC(): Reads specific data files into Darwin Core format

  • readr_Bal(): Reads specific data files into Darwin Core format

  • readr_Lic(): Reads specific data files into Darwin Core format

  • readr_Arm(): Reads specific data files into Darwin Core format

  • readr_Dor(): Reads specific data files into Darwin Core format

  • readr_MEPB(): Reads specific data files into Darwin Core format

  • readr_BBD(): Reads specific data files into Darwin Core format

  • readr_MPUJ(): Reads specific data files into Darwin Core format

  • readr_STRI(): Reads specific data files into Darwin Core format

  • readr_PALA(): Reads specific data files into Darwin Core format

  • readr_JoLa(): Reads specific data files into Darwin Core format

  • readr_VicWam(): Reads specific data files into Darwin Core format

Examples

if (FALSE) { # \dontrun{
# An example using a .xlsx file
Arm_Data <- readr_BeeBDC(
    dataset = "Arm",
    path = paste0(tempdir(), "/Additional_Datasets"),
    inFile = "/InputDatasets/Bee database Armando_Final.xlsx",
    outFile = "jbd_Arm_Data.csv",
    sheet = "Sheet1",
    dataLicense = "https://creativecommons.org/licenses/by-nc-sa/4.0/")
    
    
    # An example using a .csv file
EPEL_Data <- readr_BeeBDC(
  dataset = "readr_EPEL",
  path = paste0(tempdir(), "/Additional_Datasets"),
  inFile = "/InputDatasets/bee_data_canada.csv",
  outFile = "jbd_EPEL_data.csv",
  dataLicense = "https://creativecommons.org/licenses/by-nc-sa/4.0/")
} # }