A small test taxonomy file for package tests. This dataset was built by filtering the taxonomy data from the three test datasets, beesFlagged, beesRaw, bees3sp.
data("testTaxonomy", package = "BeeBDC")An object of class "tibble"
Taxonomic status. Values are "accepted" or "synonym"
Source of the name.
The id of the accepted taxon name or "0" if taxonomic_status == accepted.
The id number for the taxon name.
The biological kingdom the taxon belongs to. For bees, kingdom == Animalia.
The biological phylum the taxon belongs to. For bees, phylum == Arthropoda.
The biological class the taxon belongs to. For bees, class == Insecta.
The biological order the taxon belongs to. For bees, order == Hymenoptera.
The family of bee which the species belongs to.
The subfamily of bee which the species belongs to.
The tribe of bee which the species belongs to.
The subtribe of bee which the species belongs to.
The valid scientific name as it should occur in the 'scientificName" column in a Darwin Core file.
The scientificName without the scientificNameAuthority.
The scientificName without the scientificNameAuthority and with Discover Life taxonomy flags.
The genus the bee species belongs to.
The subgenus the bee species belongs to.
The specific epithet for the bee species.
The infraspecific epithet for the bee addressed.
The author who described the bee species.
Rank for the bee taxon addressed in the entry.
Additional notes about the name/taxon.
This dataset is a subset of the beesTaxonomy file described in: Dorey, J.B., Fischer, E.E., Chesshire, P.R., Nava-Bolaños, A., O’Reilly, R.L., Bossert, S., Collins, S.M., Lichtenberg, E.M., Tucker, E., Smith-Pardo, A., Falcon-Brindis, A., Guevara, D.A., Ribeiro, B.R., de Pedro, D., Hung, J.K.-L., Parys, K.A., McCabe, L.M., Rogan, M.S., Minckley, R.L., Velzco, S.J.E., Griswold, T., Zarrillo, T.A., Jetz, W., Sica, Y.V., Orr, M.C., Guzman, L.M., Ascher, J., Hughes, A.C. & Cobb, N.S. (2023) A globally synthesised and flagged bee occurrence dataset and cleaning workflow. Scientific Data, 10, 1–17. https://www.doi.org/10.1038/S41597-023-02626-W
beesRaw <- BeeBDC::testTaxonomy
head(testTaxonomy)
#> # A tibble: 6 × 24
#> flags taxonomic_status source accid id kingdom phylum class order family
#> <chr> <chr> <chr> <dbl> <dbl> <chr> <chr> <chr> <chr> <chr>
#> 1 NA accepted Discover… 0 2288 Animal… Arthr… Inse… Hyme… Andre…
#> 2 NA accepted Discover… 0 4305 Animal… Arthr… Inse… Hyme… Andre…
#> 3 NA accepted Discover… 0 4765 Animal… Arthr… Inse… Hyme… Andre…
#> 4 NA accepted Discover… 0 4783 Animal… Arthr… Inse… Hyme… Andre…
#> 5 NA accepted Discover… 0 5059 Animal… Arthr… Inse… Hyme… Andre…
#> 6 NA accepted Discover… 0 5264 Animal… Arthr… Inse… Hyme… Andre…
#> # ℹ 14 more variables: subfamily <chr>, tribe <chr>, subtribe <chr>,
#> # validName <chr>, canonical <chr>, canonical_withFlags <chr>, genus <chr>,
#> # subgenus <chr>, species <chr>, infraspecies <chr>, authorship <chr>,
#> # taxon_rank <chr>, valid <lgl>, notes <chr>