A small test checklist file for package tests. This dataset was built by filtering the checklist data from the three test datasets, beesFlagged, beesRaw, bees3sp.

data("testChecklist", package = "BeeBDC")

Format

An object of class "tibble"

validName

The valid scientificName as it should occur in the scientificName column.

DiscoverLife_name

The full country name as it occurs on Discover Life.

rNaturalEarth_name

Country name from rnaturalearth's name_long and type = "map_units".

shortName

A short version of the country name.

continent

The continent where that country is found.

DiscoverLife_ISO

The ISO country name as it occurs on Discover Life.

Alpha-2

Alpha-2 from rnaturalearth.

iso_a3_eh

iso_a3_eh from rnaturalearth.

official

Official country name = "yes" or only a Discover Life name = "no".

Source

A text strign denoting the source or author of the name-country pair.

matchCertainty

Quality of the name's match to the Discover Life checklist.

canonical

The valid species name without scientificNameAuthority.

canonical_withFlags

The validName without the scientificNameAuthority but with Discover Life flags.

family

Bee family.

subfamily

Bee subfamily.

genus

Bee genus.

subgenus

Bee subgenus.

infraspecies

Bee infraSpecificEpithet.

species

Bee specificEpithet.

scientificNameAuthorship

Bee scientificNameAuthorship.

taxon_rank

Rank of the taxon name.

Notes

Discover Life country name notes.

References

This dataset is a subset of the beesChecklist file described in: Dorey, J.B., Fischer, E.E., Chesshire, P.R., Nava-Bolaños, A., O’Reilly, R.L., Bossert, S., Collins, S.M., Lichtenberg, E.M., Tucker, E., Smith-Pardo, A., Falcon-Brindis, A., Guevara, D.A., Ribeiro, B.R., de Pedro, D., Hung, J.K.-L., Parys, K.A., McCabe, L.M., Rogan, M.S., Minckley, R.L., Velzco, S.J.E., Griswold, T., Zarrillo, T.A., Jetz, W., Sica, Y.V., Orr, M.C., Guzman, L.M., Ascher, J., Hughes, A.C. & Cobb, N.S. (2023) A globally synthesised and flagged bee occurrence dataset and cleaning workflow. Scientific Data, 10, 1–17. https://www.doi.org/10.1038/S41597-023-02626-W

Examples

beesRaw <- BeeBDC::testChecklist
head(testChecklist)
#> # A tibble: 6 × 24
#>   validName             DiscoverLife_name rNaturalEarth_name shortName continent
#>   <chr>                 <chr>             <chr>              <chr>     <chr>    
#> 1 Bombus lucorum (Linn… Afghanistan       Afghanistan        Afghanis… Asia     
#> 2 Bombus terrestris (L… Afghanistan       Afghanistan        Afghanis… Asia     
#> 3 Apis mellifera Linna… Albania           Albania            Albania   Europe   
#> 4 Bombus lapidarius (L… Albania           Albania            Albania   Europe   
#> 5 Bombus lucorum (Linn… Albania           Albania            Albania   Europe   
#> 6 Bombus pascuorum (Sc… Albania           Albania            Albania   Europe   
#> # ℹ 19 more variables: DiscoverLife_ISO <chr>, `Alpha-2` <chr>,
#> #   iso_a3_eh <chr>, official <chr>, Source <chr>, matchCertainty <chr>,
#> #   canonical <chr>, canonical_withFlags <chr>, family <chr>, subfamily <chr>,
#> #   genus <chr>, subgenus <lgl>, specificEpithet <chr>, species <chr>,
#> #   infraspecies <chr>, scientificNameAuthorship <chr>, taxon_rank <chr>,
#> #   Notes <chr>, name <chr>