A small test checklist file for package tests. This dataset was built by filtering the checklist data from the three test datasets, beesFlagged, beesRaw, bees3sp.
data("testChecklist", package = "BeeBDC")An object of class "tibble"
The valid scientificName as it should occur in the scientificName column.
The full country name as it occurs on Discover Life.
Country name from rnaturalearth's name_long and type = "map_units".
A short version of the country name.
The continent where that country is found.
The ISO country name as it occurs on Discover Life.
Alpha-2 from rnaturalearth.
iso_a3_eh from rnaturalearth.
Official country name = "yes" or only a Discover Life name = "no".
A text strign denoting the source or author of the name-country pair.
Quality of the name's match to the Discover Life checklist.
The valid species name without scientificNameAuthority.
The validName without the scientificNameAuthority but with Discover Life flags.
Bee family.
Bee subfamily.
Bee genus.
Bee subgenus.
Bee infraSpecificEpithet.
Bee specificEpithet.
Bee scientificNameAuthorship.
Rank of the taxon name.
Discover Life country name notes.
This dataset is a subset of the beesChecklist file described in: Dorey, J.B., Fischer, E.E., Chesshire, P.R., Nava-Bolaños, A., O’Reilly, R.L., Bossert, S., Collins, S.M., Lichtenberg, E.M., Tucker, E., Smith-Pardo, A., Falcon-Brindis, A., Guevara, D.A., Ribeiro, B.R., de Pedro, D., Hung, J.K.-L., Parys, K.A., McCabe, L.M., Rogan, M.S., Minckley, R.L., Velzco, S.J.E., Griswold, T., Zarrillo, T.A., Jetz, W., Sica, Y.V., Orr, M.C., Guzman, L.M., Ascher, J., Hughes, A.C. & Cobb, N.S. (2023) A globally synthesised and flagged bee occurrence dataset and cleaning workflow. Scientific Data, 10, 1–17. https://www.doi.org/10.1038/S41597-023-02626-W
beesRaw <- BeeBDC::testChecklist
head(testChecklist)
#> # A tibble: 6 × 24
#> validName DiscoverLife_name rNaturalEarth_name shortName continent
#> <chr> <chr> <chr> <chr> <chr>
#> 1 Bombus lucorum (Linn… Afghanistan Afghanistan Afghanis… Asia
#> 2 Bombus terrestris (L… Afghanistan Afghanistan Afghanis… Asia
#> 3 Apis mellifera Linna… Albania Albania Albania Europe
#> 4 Bombus lapidarius (L… Albania Albania Albania Europe
#> 5 Bombus lucorum (Linn… Albania Albania Albania Europe
#> 6 Bombus pascuorum (Sc… Albania Albania Albania Europe
#> # ℹ 19 more variables: DiscoverLife_ISO <chr>, `Alpha-2` <chr>,
#> # iso_a3_eh <chr>, official <chr>, Source <chr>, matchCertainty <chr>,
#> # canonical <chr>, canonical_withFlags <chr>, family <chr>, subfamily <chr>,
#> # genus <chr>, subgenus <lgl>, specificEpithet <chr>, species <chr>,
#> # infraspecies <chr>, scientificNameAuthorship <chr>, taxon_rank <chr>,
#> # Notes <chr>, name <chr>